Levels: Primary, Middle, High, Other
	
| Name | Level | 
|---|---|
| Brier Elementary | Other/Ungraded | 
| Circle of Independent Learning | Other/Ungraded | 
| E. M. Grimmer Elementary | Other/Ungraded | 
| G. M. Walters Middle | Other/Ungraded | 
| Harvey Green Elementary | Other/Ungraded | 
| Irvington High | Other/Ungraded | 
| J. Haley Durham Elementary | Other/Ungraded | 
| John Blacow Elementary | Other/Ungraded | 
| John F. Kennedy High | Other/Ungraded | 
| John M. Horner Middle | Other/Ungraded | 
| Joseph Azevada Elementary | Other/Ungraded | 
| O. N. Hirsch Elementary | Other/Ungraded | 
| Steven Millard Elementary | Other/Ungraded | 
| Name | Level | 
|---|---|
| California School for the Deaf-Fremont | Other/Ungraded | 
| Glankler Early Learning Center | Other/Ungraded | 
| Young Adult Program | Other/Ungraded | 
| Name | Level | 
|---|---|
| Mission Valley Rocp | Other/Ungraded | 
| Name | Level | 
|---|---|
| Robertson High (Continuation) | Other/Ungraded | 
| Vista Alternative | Other/Ungraded | 
	Levels: Primary, Middle, High, Other
	
	Levels: Elementary School, Secondary School, Other - mixed grades
	
| Name | Level | 
|---|---|
| Basis Independent Fremont | Elementary | 
| Ilm Academy | Mixed Grades | 
| Our Lady of Guadalupe School | Elementary | 
	Levels: Elementary School, Secondary School, Other - mixed grades